Do Soil Microbes Work In Hydroponics?

Written by: Soufian b. Harvey

Many growers may wonder if soil microbes can thrive in hydroponics and whether they can provide any benefits. While traditional soil gardening relies heavily on these tiny organisms, hydroponic systems present a unique environment. Let’s break down how soil microbes can fit into hydroponics and what that means for your plants.


Microbes Survival in Water-Based Systems

When it comes to survival in a water-based system, some soil microbes adapt well to hydroponic conditions, while others struggle. Certain beneficial bacteria and fungi can flourish in hydroponics, especially when there's a nutrient source available for them. While they might not behave exactly as they do in soil, these microbes can still play a role in keeping your plants healthy.

Increasing Yield and ROI with Microbial Inoculation

You might wonder if adding microbial inoculation can increase your yield and return on investment. Soil microbes can really help with nutrient absorption in hydroponics, breaking down nutrients into forms that plants can use. This means your plants get the most out of what you're giving them, which can lead to better growth and healthier crops.

Benefits of Microbes in Organic Hydroponic Systems

Microbes are especially beneficial in organic hydroponic systems compared to inert, sterile setups. In organic systems, these microbes break down organic matter, releasing essential nutrients that plants need. This interaction not only nourishes the plants but also helps create a balanced ecosystem, making everything run smoother.

Microbes in Different Hydroponic Systems

In terms of system type, microbes tend to work better in a drain-to-waste setup than in recirculating systems or Kratky methods. Drain-to-waste systems regularly flush out old nutrient solutions, giving beneficial microbes a chance to thrive and help with nutrient breakdown without getting trapped or outcompeted.

Risks of Using Microbes

Of course, using microbes does come with some risks. You can run into issues like biofilm formation, which can deplete oxygen levels and create tough conditions for your plants. If those microbes die off, it can lead to an increase in organic matter in the water, which can make the situation worse for your system.


Whether or not you choose to use microbial inoculation in your hydro system will depend on several factors, including the types of nutrients you’re using and the kind of hydro setup you have. Finding the right approach for your situation is key.

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